ViromeQC：安装与使用

2024-01-08 21:41:45

GitHub - SegataLab/viromeqc: ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

#安装依赖项
#下载文件 https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.5.2/bowtie2-2.5.2-linux-x86_64.zip/download
unzip bowtie2-2.5.2-linux-x86_64.zip
(完整路径)/bowtie2
vim ~/.bashrc
#加入
export PATH=:$PATH:(完整路径)/bowtie2-2.5.2-linux-x86_64
#保存后退出
source ~/.bashrc
#diamond安装
wget https://github.com/bbuchfink/diamond/releases/download/v2.1.8/diamond-linux64.tar.gz
tar -xvzf diamond-linux64.tar.gz
vim ~/.bashrc
#加入
export PATH=:$PATH:(完整路径)/diamond
#保存后退出
source ~/.bashrc

mkdir viromeQC
cd viromeQC
git clone --recurse-submodules https://github.com/SegataLab/viromeqc.git
(完整路径)/viromeQC.py --install

好像安装不行，得换个方式

ViromeQC?

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mkdir ~/viromeqc/index
#将下载的文件放到index文件夹里面
unzip *
bash ~/viromeqc/test/test.sh

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文章来源:https://blog.csdn.net/m0_53945548/article/details/135454752
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